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Getting Started Guide
The Genome Center
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To important UC Cores -> Sample preps, 16S, qPCR, Flow Sorting, ...
Host Microbe Systems Core -- 16S
RT-qPCR Core — DNA/RNA extractions, Taqman
Sanger Sequencing Core
Cancer Center Shared Genomics Resource
Flow Cytometry & Sorting
Getting Started
Getting Started Guide
Sample and Library Requirements
Sample Submission and Shipping
Intro: Illumina Sequencing
Intro: Element Biosciences AVITI Sequencing
Intro: Pacbio Sequencing
Intro: Nanopore Sequencing
Services
Short-Read Sequencing Services – Illumina & Element Bio AVITI
DNA Sequencing (whole-genome shotgun, targeted, amplicon, exome, ChIP, reduced-representation, Methyl, …)
RNA-Sequencing (high-throughput mRNA-Seq, total RNA-seq, 3'-Tag-Seq, miRNA-seq, ... )
Gene Expression Profiling with 3' Tag-Seq
Nanopore Sequencing – PromethION
PacBio Revio and Sequel II Library Prep & Sequencing
Linked Read Sequencing – 10X Genomics Chromium Technology
High Molecular Weight DNA Isolation (HMW-DNA)
Illumina & Aviti Sample and Library Requirements
DNA/RNA Quantification & Library QC
DNA and RNA Extraction
Single Cell Expression Profiling & Genomics (10X Genomics, SPLiT-Seq & Plate-based scRNA-Seq)
Spatial Transcriptomics
Genotyping – Illumina Infinium, Fluidigm EP1
Infinium Genotyping
Fluidigm EP1
Consultations
Bioinformatics
Sequencing Data Download & Access
Genotyping Data
Sample Submission & Forms
Sample Submission & Shipping
Illumina & Aviti Sample and Library Requirements
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UC Rates -- UC Davis and other UC campuses
Academic/Non-Profit Rates
Industry Rates
FAQs
Shared Equipment
Booking Shared Instruments - Equipment Calendar
Equipment Training & Use
Agilent Bioanalyzer 2100
FilterMax F5 Plate Reader
Qubit Fluorometer
LabChip GX Touch HT (High-Throughput Bioanalyzer)
Nanodrop Spectrophotometer
Sonicators
BluePippin and Pippin HT
Robotic Liquid Handlers
Fluidigm C1 – Single Cell Genomics
Fluidigm Access Array
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